Cut and paste your sequences here below.

Optional Parameters

Result page format:

Alignment parameters

Symbol comparison Table - Gap open def. - Gap ext def.:

Gap penalties: (default: value from comparison table)

• Gap penalty at opening:
• Gap penalty at extension:

Gap penalty at extremities: none end beginning both

One iteration only: no yes

Presentation options for a result page as a coloured image or html text.

Font options

Text size (image only): MediumBold TinySmallMediumBoldLargeGiant Text colour (image only): black redbluegreenblackgreywhite yellowpinkorangevioletbrowncyan Background colour: white redbluegreenblackgreywhite yellowpinkorangevioletbrowncyan High consensus colour: red redbluegreenblackgreywhite yellowpinkorangevioletbrowncyan Low consensus colour: blue redbluegreenblackgreywhite yellowpinkorangevioletbrowncyan Neutral colour: black redbluegreenblackgreywhite yellowpinkorangevioletbrowncyan

Consensus levels

• High consensus value: % (default: 90%)
• Low consensus value: % (default: 50 %) must be less than first value.

Other options

Output style: Normal CaseDifference Maximum line length: Graduation step: