MULTALIN SEQUENCE EXAMPLE PAGE

Sample sequences for MultAlin

Simply copy and paste any of the following sequences to the input area on the main page. You must paste at least two sequences to make an alignment. All sequences must be in the same format.

Sample formats :

multalin
fasta
EMBL-SwissProt
Genbank

Multalin format

>CCPC50       129
     1  QDGDAAKGEK EFNKCKACHM IQAPDGTDII KGGKTGPNLY GVVGRKIASE
    51  EGFKYGEGIL EVAEKNPDLT WTEADLIEYV TDPKPWLVKM TDDKGAKTKM
   101  TFKMGKNQAD VVAFLAQNSP DAGGDGEAA
 
>CCRF2S       124
     1  QEGDPEAGAK AFNQCQTCHV IVDDSGTTIA GRNAKTGPNL YGVVGRTAGT
    51  QADFKGYGEG MKEAGAKGLA WDEEHFVQYV QDPTKFLKEY TGDAKAKGKM
   101  TFKLKKEADA HNIWAYLQQV AVRP
 
>CCRF2C       116
     1  GDAAKGEKEF NKCKTCHSII APDGTEIVKG AKTGPNLYGV VGRTAGTYPE
    51  FKYKDSIVAL GASGFAWTEE DIATYVKDPG AFLKEKLDDK KAKTGMAFKL
   101  AKGGEDVAAY LASVVK
 
>CCQF2R       112
     1  EGDAAAGEKV SKKCLACHTF DQGGANKVGP NLFGVFENTA AHKDNYAYSE
    51  SYTEMKAKGL TWTEANLAAY VKNPKAFVLE KSGDPKAKSK MTFKLTKDDE
   101  IENVIAYLKT LK
 
>CCQF2P       113
     1  AGDAAVGEKI AKAKCTACHD LNKGGPIKVG PPLFGVFGRT TGTFAGYSYS
    51  PGYTVMGQKG HTWDDNALKA YLLDPKGYVQ AKSGDPKANS KMIFRLEKDD
   101  DVANVIAYLH TMK

Fasta format

>CCPC50
QDGDAAKGEKEFNKCKACHMIQAPDGTDIIKGGKTGPNLYGVVGRKIASE
EGFKYGEGILEVAEKNPDLTWTEADLIEYVTDPKPWLVKMTDDKGAKTKM
TFKMGKNQADVVAFLAQNSPDAGGDGEAA
>CCRF2S
QEGDPEAGAKAFNQCQTCHVIVDDSGTTIAGRNAKTGPNLYGVVGRTAGT
QADFKGYGEGMKEAGAKGLAWDEEHFVQYVQDPTKFLKEYTGDAKAKGKM
TFKLKKEADAHNIWAYLQQVAVRP
>CCRF2C
GDAAKGEKEFNKCKTCHSIIAPDGTEIVKGAKTGPNLYGVVGRTAGTYPE
FKYKDSIVALGASGFAWTEEDIATYVKDPGAFLKEKLDDKKAKTGMAFKL
AKGGEDVAAYLASVVK
>CCQF2R
EGDAAAGEKVSKKCLACHTFDQGGANKVGPNLFGVFENTAAHKDNYAYSE
SYTEMKAKGLTWTEANLAAYVKNPKAFVLEKSGDPKAKSKMTFKLTKDDE
IENVIAYLKTLK
>CCQF2P
AGDAAVGEKIAKAKCTACHDLNKGGPIKVGPPLFGVFGRTTGTFAGYSYS
PGYTVMGQKGHTWDDNALKAYLLDPKGYVQAKSGDPKANSKMIFRLEKDD
DVANVIAYLHTMK

Genbank format

LOCUS       45477         468 bp    DNA             BCT       23-JAN-1992
ORIGIN      
        1 atgaagatca gcatctatgc cactctcgcc gccatcaccc tcgccctgcc cgctgcggcc
       61 caggatggcg acgccgccaa aggcgagaaa gaattcaaca agtgcaaggc ttgccacatg
      121 atccaggcgc cggacggcac cgacatcatc aagggcggca agaccgggcc caacctttac
      181 ggcgtcgtcg gccgcaagat cgcctcggag gagggcttca aatacggcga aggcatcctc
      241 gaggtcgccg aaaagaaccc cgacctgacc tggaccgagg ccgacctgat cgaatacgtc
      301 accgacccca agccctggct ggtcaagatg accgacgaca agggcgccaa gaccaagatg
      361 accttcaaga tgggcaagaa ccaggccgac gtggtggcct tcctggccca gaactcgccc
      421 gatgcgggcg gcgacggcga ggctgcggcc gagggcgaat cgaactga 
//
LOCUS       M14501        438 bp    DNA             BCT       26-APR-1993
ORIGIN      BamHI site.
        1 atgaagttcc aagtcaaggc cctcgccgcc atcgccgcat tcgcggcgct gccggcgctc
       61 gcgcaggaag gcgacccgga agccggggcc aaggccttca accagtgcca gacctgccac
      121 gtcatcgtgg acgaatccgg caccaccatc gccggccgca acgccaagac cggcccgaac
      181 ctctacggcg tcgtgggccg caccgcgggc acgcaggccg acttcaaggg ctatggcgaa
      241 ggcatgaagg aagccggcgc gaaagggctc gcctgggatg aagagcattt cgtccagtat
      301 gttcaggatc cgaccaagtt cctgaaggaa tataccggcg acgcgaaagc caagggcaag
      361 atgaccttca agctgaagaa ggaagcggac gcccacaaca tctgggccta cctccagcag
      421 gtcgccgtcc ggccctga    
//
LOCUS       M12776        414 bp    DNA             BCT       26-APR-1993
ORIGIN      BamHI site.
        1 atgaagttcc aagtcaaggc cctcgccgcc atcgccgcat tcgcggcgct gccggcgctc
       61 gcgcaggaag gcgacccgga agccggggcc aaggccttca accagtgcca gacctgccac
      121 gtcatcgtgg acgaatccgg caccaccatc gccggccgca acgccaagac cggcccgaac
      181 ctctacggcg tcgtgggccg caccgcgggc acgcaggccg acttcaaggg ctatggcgaa
      241 ggcatgaagg aagccggcgc gaaagggctc gcctgggatg aagagcattt cgtccagtat
      301 gttcaggatc cgaccaagtt cctgaaggaa tataccggcg acgcgaaagc caagggcaag
      361 atgaccttca agctgaagaa ggaagcggac gcccacaaca tctgggccta cctccagcag
      421 gtcgccgtcc ggccctga    
//
LOCUS       46378         408 bp    DNA             BCT       22-MAR-1995
ORIGIN      
        1 atgaagaagg gtttcctggc cgccggcgtt ttcgccgccg tggctttcgc ttccggcgcg
       61 gcccttgccg agggtgatgc cgccgctggc gaaaaagtca gcaagaagtg cctcgcctgc
      121 cacactttcg atcagggggg cgccaataag gtcggcccca acctgttcgg tgtgttcgag
      181 aacacggccg cccacaagga cgactacgcc tattcggaat cctacaccga gatgaaggcc
      241 aagggcctga cctggacgga ggcgaacctc gccgcctatg tcaaggatcc caaggccttc
      301 gttcttgaga agtcgggcga tccgaaggcc aagagcaaga tgaccttcaa gttgaccaag
      361 gacgacgaga tcgagaacgt catcgcctac ttgaagaccc tgaagtag 
//

EMBL-SwissProt format

ID   C550_PARDE     STANDARD;      PRT;   155 AA.
SQ   SEQUENCE   155 AA;  16397 MW;  CB003CA423879B03 CRC64;
     MKISIYATLA AITLALPAAA QDGDAAKGEK EFNKCKACHM IQAPDGTDII KGGKTGPNLY
     GVVGRKIASE EGFKYGEGIL EVAEKNPDLT WTEADLIEYV TDPKPWLVKM TDDKGAKTKM
     TFKMGKNQAD VVAFLAQNSP DAGGDGEAAA EGESN
//
ID   CY2_RHOSH      STANDARD;      PRT;   145 AA.
SQ   SEQUENCE   145 AA;  15582 MW;  4A47A98A75F0CB43 CRC64;
     MKFQVKALAA IAAFAALPAL AQEGDPEAGA KAFNQCQTCH VIVDESGTTI AGRNAKTGPN
     LYGVVGRTAG TQADFKGYGE GMKEAGAKGL AWDEEHFVQY VQDPTKFLKE YTGDAKAKGK
     MTFKLKKEAD AHNIWAYLQQ VAVRP
//
ID   CY2_RHOCA      STANDARD;      PRT;   137 AA.
SQ   SEQUENCE   137 AA;  14279 MW;  394E29348E4537CD CRC64;
     MKISLTAATV AALVLAAPAF AGDAAKGEKE FNKCKTCHSI IAPDGTEIVK GAKTGPNLYG
     VVGRTAGTYP EFKYKDSIVA LGASGFAWTE EDIATYVKDP GAFLKEKLDD KKAKTGMAFK
     LAKGGEDVAA YLASVVK
//
ID   CY2_RHORU      STANDARD;      PRT;   135 AA.
SQ   SEQUENCE   135 AA;  14395 MW;  61B1B2C2757DE6BA CRC64;
     MKKGFLAAGV FAAVAFASGA ALAEGDAAAG EKVSKKCLAC HTFDQGGANK VGPNLFGVFE
     NTAAHKDDYA YSESYTEMKA KGLTWTEANL AAYVKDPKAF VLEKSGDPKA KSKMTFKLTK
     DDEIENVIAY LKTLK
//
ID   CY2_RHOPH      STANDARD;      PRT;   113 AA.
SQ   SEQUENCE   113 AA;  12069 MW;  B215280D9F0186D2 CRC64;
     AGDAAVGEKI AKAKCTACHD LNKGGPIKVG PPLFGVFGRT TGTFAGYSYS PGYTVMGQKG
     HTWDDNALKA YLLDPKGYVQ AKSGDPKANS KMIFRLEKDD DVANVIAYLH TMK
//

Florence Corpet MultAlin's author. (Comments and suggestions very welcome)

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Last modified: Date 2000/03/21