Browsing protein families via the "Rich Family Description" format
Bioinformatics Vol. 15, no 12 1999 pages 1020-1027

Florence CORPET, Jerome GOUZY and Daniel KAHN

Get a better view of your protein family : phylogenetic tree, pruned tree and subtrees, summarised coloured alignment and subalignments.

 Some cytochrome sequences
 MSF:    134    Check:   0         ..
 Name: C550_PARDE        Len:   134  Check: 7173  Weight:  0.67
 Name: CY2_RHOCA         Len:   134  Check: 1222  Weight:  0.67
 Name: CY2_RHOSH         Len:   134  Check: 8544  Weight:  1.29
 Name: CY2_RHORU         Len:   134  Check: 8657  Weight:  1.19
 Name: CY2_RHOPH         Len:   134  Check: 1440  Weight:  1.19

//

                      1                                                   50
             C550_PARDE  QDGDAAKGEK EFN.KCKACH MIQAPDGTDI I.KGGKTGPN LYGVVGRKIA
              CY2_RHOCA  ..GDAAKGEK EFN.KCKTCH SIIAPDGTEI V.KGAKTGPN LYGVVGRTAG
              CY2_RHOSH  QEGDPEAGAK AFN.QCQTCH VIVDDSGTTI AGRNAKTGPN LYGVVGRTAG
              CY2_RHORU  .EGDAAAGEK VSK.KCLACH TF..DQGGAN .....KVGPN LFGVFENTAA
              CY2_RHOPH  .AGDAAVGEK IAKAKCTACH DL..NKGGPI .....KVGPP LFGVFGRTTG

                      51                                                 100
             C550_PARDE  SEEGFK.YGE GILEVAEKNP DLTWTEADLI EYVTDPKPWL VKMTDDKGAK
              CY2_RHOCA  TYPEFK.YKD SIVALGASG. .FAWTEEDIA TYVKDPGAFL KEKLDDKKAK
              CY2_RHOSH  TQADFKGYGE GMKEAGAKG. .LAWDEEHFV QYVQDPTKFL KEYTGDAKAK
              CY2_RHORU  HKDNYA.YSE SYTEMKAKG. .LTWTEANLA AYVKNPKAFV LEKSGDPKAK
              CY2_RHOPH  TFAGYS.YSP GYTVMGQKG. .HTWDDNALK AYLLDPKGYV QAKSGDPKAN

                      101                               134
             C550_PARDE  TKMTFKMGKN QA..DVVAFL AQNSPDAGGD GEAA
              CY2_RHOCA  TGMAFKLAKG GE..DVAAYL ASVVK..... ....
              CY2_RHOSH  GKMTFKLKKE ADAHNIWAYL QQVAVRP... ....
              CY2_RHORU  SKMTFKLTKD DEIENVIAYL KTLK...... ....
              CY2_RHOPH  SKMIFRLEKD DDVANVIAYL HTMK...... ....

//